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org.openscience.nmrshiftdb.om
Class BaseDBAtom

java.lang.Object
  extended by org.apache.torque.om.BaseObject
      extended by org.openscience.nmrshiftdb.om.BaseDBAtom
All Implemented Interfaces:
java.io.Serializable, org.apache.torque.om.Persistent
Direct Known Subclasses:
DBAtom
public abstract class BaseDBAtom
extends org.apache.torque.om.BaseObject

This class was autogenerated by Torque on: [Tue Nov 21 21:48:11 CET 2006] You should not use this class directly. It should not even be extended all references should be to DBAtom

See Also:
Serialized Form

Field Summary
private  DBMolecule aDBMolecule
           
private  boolean alreadyInSave
          flag to prevent endless save loop, if this object is referenced by another object which falls in this transaction.
private  int atomicMass
          The value for the atomicMass field
private  int atomId
          The value for the atomId field
protected  java.util.List collDBBondDBAtoms
          Collection to store aggregation of collDBBondDBAtoms
protected  java.util.List collDBCoordinateSet2ds
          Collection to store aggregation of collDBCoordinateSet2ds
protected  java.util.List collDBCoordinateSet3ds
          Collection to store aggregation of collDBCoordinateSet3ds
protected  java.util.List collDBCouplingsRelatedByAtomId1
          Collection to store aggregation of collDBCouplingsRelatedByAtomId1
protected  java.util.List collDBCouplingsRelatedByAtomId2
          Collection to store aggregation of collDBCouplingsRelatedByAtomId2
protected  java.util.List collDBIdentifiers
          Collection to store aggregation of collDBIdentifiers
protected  java.util.List collDBSignalDBAtoms
          Collection to store aggregation of collDBSignalDBAtoms
private static java.util.List fieldNames
           
private  int formalCharge
          The value for the formalCharge field
private  java.lang.String hetero
          The value for the hetero field
private  java.lang.String hoseCode
          The value for the hoseCode field
private  java.lang.String hoseCodeWithRings
          The value for the hoseCodeWithRings field
private  java.lang.String isAromatic
          The value for the isAromatic field
private  java.lang.String isVisible
          The value for the isVisible field
private  org.apache.torque.util.Criteria lastDBBondDBAtomsCriteria
          The criteria used to select the current contents of collDBBondDBAtoms
private  org.apache.torque.util.Criteria lastDBCoordinateSet2dsCriteria
          The criteria used to select the current contents of collDBCoordinateSet2ds
private  org.apache.torque.util.Criteria lastDBCoordinateSet3dsCriteria
          The criteria used to select the current contents of collDBCoordinateSet3ds
private  org.apache.torque.util.Criteria lastDBCouplingsRelatedByAtomId1Criteria
          The criteria used to select the current contents of collDBCouplingsRelatedByAtomId1
private  org.apache.torque.util.Criteria lastDBCouplingsRelatedByAtomId2Criteria
          The criteria used to select the current contents of collDBCouplingsRelatedByAtomId2
private  org.apache.torque.util.Criteria lastDBIdentifiersCriteria
          The criteria used to select the current contents of collDBIdentifiers
private  org.apache.torque.util.Criteria lastDBSignalDBAtomsCriteria
          The criteria used to select the current contents of collDBSignalDBAtoms
private  int moleculeId
          The value for the moleculeId field
private static DBAtomPeer peer
          The Peer class
private  java.lang.String symbol
          The value for the symbol field
 
Fields inherited from class org.apache.torque.om.BaseObject
NEW_ID
 
Constructor Summary
BaseDBAtom()
           
 
Method Summary
 void addDBBondDBAtom(DBBondDBAtom l)
          Method called to associate a DBBondDBAtom object to this object through the DBBondDBAtom foreign key attribute
 void addDBCoordinateSet2d(DBCoordinateSet2d l)
          Method called to associate a DBCoordinateSet2d object to this object through the DBCoordinateSet2d foreign key attribute
 void addDBCoordinateSet3d(DBCoordinateSet3d l)
          Method called to associate a DBCoordinateSet3d object to this object through the DBCoordinateSet3d foreign key attribute
 void addDBCouplingRelatedByAtomId1(DBCoupling l)
          Method called to associate a DBCoupling object to this object through the DBCoupling foreign key attribute
 void addDBCouplingRelatedByAtomId2(DBCoupling l)
          Method called to associate a DBCoupling object to this object through the DBCoupling foreign key attribute
 void addDBIdentifier(DBIdentifier l)
          Method called to associate a DBIdentifier object to this object through the DBIdentifier foreign key attribute
 void addDBSignalDBAtom(DBSignalDBAtom l)
          Method called to associate a DBSignalDBAtom object to this object through the DBSignalDBAtom foreign key attribute
 DBAtom copy()
          Makes a copy of this object.
protected  DBAtom copyInto(DBAtom copyObj)
           
 int getAtomicMass()
          Get the AtomicMass
 int getAtomId()
          Get the AtomId
 java.lang.Object getByName(java.lang.String name)
          Retrieves a field from the object by name passed in as a String.
 java.lang.Object getByPeerName(java.lang.String name)
          Retrieves a field from the object by name passed in as a String.
 java.lang.Object getByPosition(int pos)
          Retrieves a field from the object by Position as specified in the xml schema.
 java.util.List getDBBondDBAtoms()
          If this collection has already been initialized, returns the collection.
 java.util.List getDBBondDBAtoms(java.sql.Connection con)
          If this collection has already been initialized, returns the collection.
 java.util.List getDBBondDBAtoms(org.apache.torque.util.Criteria criteria)
          If this collection has already been initialized with an identical criteria, it returns the collection.
 java.util.List getDBBondDBAtoms(org.apache.torque.util.Criteria criteria, java.sql.Connection con)
          If this collection has already been initialized with an identical criteria, it returns the collection.
protected  java.util.List getDBBondDBAtomsJoinDBAtom(org.apache.torque.util.Criteria criteria)
          If this collection has already been initialized with an identical criteria, it returns the collection.
protected  java.util.List getDBBondDBAtomsJoinDBBond(org.apache.torque.util.Criteria criteria)
          If this collection has already been initialized with an identical criteria, it returns the collection.
 java.util.List getDBCoordinateSet2ds()
          If this collection has already been initialized, returns the collection.
 java.util.List getDBCoordinateSet2ds(java.sql.Connection con)
          If this collection has already been initialized, returns the collection.
 java.util.List getDBCoordinateSet2ds(org.apache.torque.util.Criteria criteria)
          If this collection has already been initialized with an identical criteria, it returns the collection.
 java.util.List getDBCoordinateSet2ds(org.apache.torque.util.Criteria criteria, java.sql.Connection con)
          If this collection has already been initialized with an identical criteria, it returns the collection.
protected  java.util.List getDBCoordinateSet2dsJoinDBAtom(org.apache.torque.util.Criteria criteria)
          If this collection has already been initialized with an identical criteria, it returns the collection.
protected  java.util.List getDBCoordinateSet2dsJoinDBCoordinateSetType(org.apache.torque.util.Criteria criteria)
          If this collection has already been initialized with an identical criteria, it returns the collection.
 java.util.List getDBCoordinateSet3ds()
          If this collection has already been initialized, returns the collection.
 java.util.List getDBCoordinateSet3ds(java.sql.Connection con)
          If this collection has already been initialized, returns the collection.
 java.util.List getDBCoordinateSet3ds(org.apache.torque.util.Criteria criteria)
          If this collection has already been initialized with an identical criteria, it returns the collection.
 java.util.List getDBCoordinateSet3ds(org.apache.torque.util.Criteria criteria, java.sql.Connection con)
          If this collection has already been initialized with an identical criteria, it returns the collection.
protected  java.util.List getDBCoordinateSet3dsJoinDBAtom(org.apache.torque.util.Criteria criteria)
          If this collection has already been initialized with an identical criteria, it returns the collection.
protected  java.util.List getDBCoordinateSet3dsJoinDBCoordinateSetType(org.apache.torque.util.Criteria criteria)
          If this collection has already been initialized with an identical criteria, it returns the collection.
 java.util.List getDBCouplingsRelatedByAtomId1()
          If this collection has already been initialized, returns the collection.
 java.util.List getDBCouplingsRelatedByAtomId1(java.sql.Connection con)
          If this collection has already been initialized, returns the collection.
 java.util.List getDBCouplingsRelatedByAtomId1(org.apache.torque.util.Criteria criteria)
          If this collection has already been initialized with an identical criteria, it returns the collection.
 java.util.List getDBCouplingsRelatedByAtomId1(org.apache.torque.util.Criteria criteria, java.sql.Connection con)
          If this collection has already been initialized with an identical criteria, it returns the collection.
protected  java.util.List getDBCouplingsRelatedByAtomId1JoinDBAtomRelatedByAtomId2(org.apache.torque.util.Criteria criteria)
          If this collection has already been initialized with an identical criteria, it returns the collection.
protected  java.util.List getDBCouplingsRelatedByAtomId1JoinDBSpectrum(org.apache.torque.util.Criteria criteria)
          If this collection has already been initialized with an identical criteria, it returns the collection.
 java.util.List getDBCouplingsRelatedByAtomId2()
          If this collection has already been initialized, returns the collection.
 java.util.List getDBCouplingsRelatedByAtomId2(java.sql.Connection con)
          If this collection has already been initialized, returns the collection.
 java.util.List getDBCouplingsRelatedByAtomId2(org.apache.torque.util.Criteria criteria)
          If this collection has already been initialized with an identical criteria, it returns the collection.
 java.util.List getDBCouplingsRelatedByAtomId2(org.apache.torque.util.Criteria criteria, java.sql.Connection con)
          If this collection has already been initialized with an identical criteria, it returns the collection.
protected  java.util.List getDBCouplingsRelatedByAtomId2JoinDBAtomRelatedByAtomId1(org.apache.torque.util.Criteria criteria)
          If this collection has already been initialized with an identical criteria, it returns the collection.
protected  java.util.List getDBCouplingsRelatedByAtomId2JoinDBSpectrum(org.apache.torque.util.Criteria criteria)
          If this collection has already been initialized with an identical criteria, it returns the collection.
 java.util.List getDBIdentifiers()
          If this collection has already been initialized, returns the collection.
 java.util.List getDBIdentifiers(java.sql.Connection con)
          If this collection has already been initialized, returns the collection.
 java.util.List getDBIdentifiers(org.apache.torque.util.Criteria criteria)
          If this collection has already been initialized with an identical criteria, it returns the collection.
 java.util.List getDBIdentifiers(org.apache.torque.util.Criteria criteria, java.sql.Connection con)
          If this collection has already been initialized with an identical criteria, it returns the collection.
protected  java.util.List getDBIdentifiersJoinDBAtom(org.apache.torque.util.Criteria criteria)
          If this collection has already been initialized with an identical criteria, it returns the collection.
protected  java.util.List getDBIdentifiersJoinDBLiterature(org.apache.torque.util.Criteria criteria)
          If this collection has already been initialized with an identical criteria, it returns the collection.
 DBMolecule getDBMolecule()
          Get the associated DBMolecule object
 java.util.List getDBSignalDBAtoms()
          If this collection has already been initialized, returns the collection.
 java.util.List getDBSignalDBAtoms(java.sql.Connection con)
          If this collection has already been initialized, returns the collection.
 java.util.List getDBSignalDBAtoms(org.apache.torque.util.Criteria criteria)
          If this collection has already been initialized with an identical criteria, it returns the collection.
 java.util.List getDBSignalDBAtoms(org.apache.torque.util.Criteria criteria, java.sql.Connection con)
          If this collection has already been initialized with an identical criteria, it returns the collection.
protected  java.util.List getDBSignalDBAtomsJoinDBAtom(org.apache.torque.util.Criteria criteria)
          If this collection has already been initialized with an identical criteria, it returns the collection.
protected  java.util.List getDBSignalDBAtomsJoinDBSignal(org.apache.torque.util.Criteria criteria)
          If this collection has already been initialized with an identical criteria, it returns the collection.
static java.util.List getFieldNames()
          Generate a list of field names.
 int getFormalCharge()
          Get the FormalCharge
 java.lang.String getHetero()
          Get the Hetero
 java.lang.String getHoseCode()
          Get the HoseCode
 java.lang.String getHoseCodeWithRings()
          Get the HoseCodeWithRings
 java.lang.String getIsAromatic()
          Get the IsAromatic
 java.lang.String getIsVisible()
          Get the IsVisible
 int getMoleculeId()
          Get the MoleculeId
 DBAtomPeer getPeer()
          returns a peer instance associated with this om.
 org.apache.torque.om.ObjectKey getPrimaryKey()
          returns an id that differentiates this object from others of its class.
 java.lang.String getSymbol()
          Get the Symbol
protected  void initDBBondDBAtoms()
          Temporary storage of collDBBondDBAtoms to save a possible db hit in the event objects are add to the collection, but the complete collection is never requested.
protected  void initDBCoordinateSet2ds()
          Temporary storage of collDBCoordinateSet2ds to save a possible db hit in the event objects are add to the collection, but the complete collection is never requested.
protected  void initDBCoordinateSet3ds()
          Temporary storage of collDBCoordinateSet3ds to save a possible db hit in the event objects are add to the collection, but the complete collection is never requested.
protected  void initDBCouplingsRelatedByAtomId1()
          Temporary storage of collDBCouplingsRelatedByAtomId1 to save a possible db hit in the event objects are add to the collection, but the complete collection is never requested.
protected  void initDBCouplingsRelatedByAtomId2()
          Temporary storage of collDBCouplingsRelatedByAtomId2 to save a possible db hit in the event objects are add to the collection, but the complete collection is never requested.
protected  void initDBIdentifiers()
          Temporary storage of collDBIdentifiers to save a possible db hit in the event objects are add to the collection, but the complete collection is never requested.
protected  void initDBSignalDBAtoms()
          Temporary storage of collDBSignalDBAtoms to save a possible db hit in the event objects are add to the collection, but the complete collection is never requested.
 void save()
          Stores the object in the database.
 void save(java.sql.Connection con)
          Stores the object in the database.
 void save(java.lang.String dbName)
          Stores the object in the database.
 void setAtomicMass(int v)
          Set the value of AtomicMass
 void setAtomId(int v)
          Set the value of AtomId
 void setDBMolecule(DBMolecule v)
          Declares an association between this object and a DBMolecule object
 void setDBMoleculeKey(org.apache.torque.om.ObjectKey key)
          Provides convenient way to set a relationship based on a ObjectKey.
 void setFormalCharge(int v)
          Set the value of FormalCharge
 void setHetero(java.lang.String v)
          Set the value of Hetero
 void setHoseCode(java.lang.String v)
          Set the value of HoseCode
 void setHoseCodeWithRings(java.lang.String v)
          Set the value of HoseCodeWithRings
 void setIsAromatic(java.lang.String v)
          Set the value of IsAromatic
 void setIsVisible(java.lang.String v)
          Set the value of IsVisible
 void setMoleculeId(int v)
          Set the value of MoleculeId
 void setPrimaryKey(org.apache.torque.om.ObjectKey key)
          Set the PrimaryKey using ObjectKey.
 void setPrimaryKey(java.lang.String key)
          Set the PrimaryKey using a String.
 void setSymbol(java.lang.String v)
          Set the value of Symbol
 java.lang.String toString()
           
 
Methods inherited from class org.apache.torque.om.BaseObject
equals, equals, getLog, hashCode, isModified, isNew, log, resetModified, setModified, setNew, setPrimaryKey
 
Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, wait, wait, wait
 

Field Detail

peer

private static final DBAtomPeer peer
The Peer class

atomId

private int atomId
The value for the atomId field

symbol

private java.lang.String symbol
The value for the symbol field

moleculeId

private int moleculeId
The value for the moleculeId field

hoseCode

private java.lang.String hoseCode
The value for the hoseCode field

hoseCodeWithRings

private java.lang.String hoseCodeWithRings
The value for the hoseCodeWithRings field

atomicMass

private int atomicMass
The value for the atomicMass field

formalCharge

private int formalCharge
The value for the formalCharge field

isAromatic

private java.lang.String isAromatic
The value for the isAromatic field

isVisible

private java.lang.String isVisible
The value for the isVisible field

hetero

private java.lang.String hetero
The value for the hetero field

aDBMolecule

private DBMolecule aDBMolecule

collDBCoordinateSet2ds

protected java.util.List collDBCoordinateSet2ds
Collection to store aggregation of collDBCoordinateSet2ds

lastDBCoordinateSet2dsCriteria

private org.apache.torque.util.Criteria lastDBCoordinateSet2dsCriteria
The criteria used to select the current contents of collDBCoordinateSet2ds

collDBCoordinateSet3ds

protected java.util.List collDBCoordinateSet3ds
Collection to store aggregation of collDBCoordinateSet3ds

lastDBCoordinateSet3dsCriteria

private org.apache.torque.util.Criteria lastDBCoordinateSet3dsCriteria
The criteria used to select the current contents of collDBCoordinateSet3ds

collDBCouplingsRelatedByAtomId1

protected java.util.List collDBCouplingsRelatedByAtomId1
Collection to store aggregation of collDBCouplingsRelatedByAtomId1

lastDBCouplingsRelatedByAtomId1Criteria

private org.apache.torque.util.Criteria lastDBCouplingsRelatedByAtomId1Criteria
The criteria used to select the current contents of collDBCouplingsRelatedByAtomId1

collDBCouplingsRelatedByAtomId2

protected java.util.List collDBCouplingsRelatedByAtomId2
Collection to store aggregation of collDBCouplingsRelatedByAtomId2

lastDBCouplingsRelatedByAtomId2Criteria

private org.apache.torque.util.Criteria lastDBCouplingsRelatedByAtomId2Criteria
The criteria used to select the current contents of collDBCouplingsRelatedByAtomId2

collDBBondDBAtoms

protected java.util.List collDBBondDBAtoms
Collection to store aggregation of collDBBondDBAtoms

lastDBBondDBAtomsCriteria

private org.apache.torque.util.Criteria lastDBBondDBAtomsCriteria
The criteria used to select the current contents of collDBBondDBAtoms

collDBSignalDBAtoms

protected java.util.List collDBSignalDBAtoms
Collection to store aggregation of collDBSignalDBAtoms

lastDBSignalDBAtomsCriteria

private org.apache.torque.util.Criteria lastDBSignalDBAtomsCriteria
The criteria used to select the current contents of collDBSignalDBAtoms

collDBIdentifiers

protected java.util.List collDBIdentifiers
Collection to store aggregation of collDBIdentifiers

lastDBIdentifiersCriteria

private org.apache.torque.util.Criteria lastDBIdentifiersCriteria
The criteria used to select the current contents of collDBIdentifiers

fieldNames

private static java.util.List fieldNames

alreadyInSave

private boolean alreadyInSave
flag to prevent endless save loop, if this object is referenced by another object which falls in this transaction.

Constructor Detail

BaseDBAtom

public BaseDBAtom()
Method Detail

getAtomId

public int getAtomId()
Get the AtomId

Returns:
int

setAtomId

public void setAtomId(int v)
               throws org.apache.torque.TorqueException
Set the value of AtomId

Parameters:
v - new value
Throws:
org.apache.torque.TorqueException

getSymbol

public java.lang.String getSymbol()
Get the Symbol

Returns:
String

setSymbol

public void setSymbol(java.lang.String v)
Set the value of Symbol

Parameters:
v - new value

getMoleculeId

public int getMoleculeId()
Get the MoleculeId

Returns:
int

setMoleculeId

public void setMoleculeId(int v)
                   throws org.apache.torque.TorqueException
Set the value of MoleculeId

Parameters:
v - new value
Throws:
org.apache.torque.TorqueException

getHoseCode

public java.lang.String getHoseCode()
Get the HoseCode

Returns:
String

setHoseCode

public void setHoseCode(java.lang.String v)
Set the value of HoseCode

Parameters:
v - new value

getHoseCodeWithRings

public java.lang.String getHoseCodeWithRings()
Get the HoseCodeWithRings

Returns:
String

setHoseCodeWithRings

public void setHoseCodeWithRings(java.lang.String v)
Set the value of HoseCodeWithRings

Parameters:
v - new value

getAtomicMass

public int getAtomicMass()
Get the AtomicMass

Returns:
int

setAtomicMass

public void setAtomicMass(int v)
Set the value of AtomicMass

Parameters:
v - new value

getFormalCharge

public int getFormalCharge()
Get the FormalCharge

Returns:
int

setFormalCharge

public void setFormalCharge(int v)
Set the value of FormalCharge

Parameters:
v - new value

getIsAromatic

public java.lang.String getIsAromatic()
Get the IsAromatic

Returns:
String

setIsAromatic

public void setIsAromatic(java.lang.String v)
Set the value of IsAromatic

Parameters:
v - new value

getIsVisible

public java.lang.String getIsVisible()
Get the IsVisible

Returns:
String

setIsVisible

public void setIsVisible(java.lang.String v)
Set the value of IsVisible

Parameters:
v - new value

getHetero

public java.lang.String getHetero()
Get the Hetero

Returns:
String

setHetero

public void setHetero(java.lang.String v)
Set the value of Hetero

Parameters:
v - new value

setDBMolecule

public void setDBMolecule(DBMolecule v)
                   throws org.apache.torque.TorqueException
Declares an association between this object and a DBMolecule object

Parameters:
v - DBMolecule
Throws:
org.apache.torque.TorqueException

getDBMolecule

public DBMolecule getDBMolecule()
                         throws org.apache.torque.TorqueException
Get the associated DBMolecule object

Returns:
the associated DBMolecule object
Throws:
org.apache.torque.TorqueException

setDBMoleculeKey

public void setDBMoleculeKey(org.apache.torque.om.ObjectKey key)
                      throws org.apache.torque.TorqueException
Provides convenient way to set a relationship based on a ObjectKey. e.g. bar.setFooKey(foo.getPrimaryKey())

Throws:
org.apache.torque.TorqueException

initDBCoordinateSet2ds

protected void initDBCoordinateSet2ds()
Temporary storage of collDBCoordinateSet2ds to save a possible db hit in the event objects are add to the collection, but the complete collection is never requested.

addDBCoordinateSet2d

public void addDBCoordinateSet2d(DBCoordinateSet2d l)
                          throws org.apache.torque.TorqueException
Method called to associate a DBCoordinateSet2d object to this object through the DBCoordinateSet2d foreign key attribute

Parameters:
l - DBCoordinateSet2d
Throws:
org.apache.torque.TorqueException

getDBCoordinateSet2ds

public java.util.List getDBCoordinateSet2ds()
                                     throws org.apache.torque.TorqueException
If this collection has already been initialized, returns the collection. Otherwise returns the results of getDBCoordinateSet2ds(new Criteria())

Throws:
org.apache.torque.TorqueException

getDBCoordinateSet2ds

public java.util.List getDBCoordinateSet2ds(org.apache.torque.util.Criteria criteria)
                                     throws org.apache.torque.TorqueException
If this collection has already been initialized with an identical criteria, it returns the collection. Otherwise if this DBAtom has previously been saved, it will retrieve related DBCoordinateSet2ds from storage. If this DBAtom is new, it will return an empty collection or the current collection, the criteria is ignored on a new object.

Throws:
org.apache.torque.TorqueException

getDBCoordinateSet2ds

public java.util.List getDBCoordinateSet2ds(java.sql.Connection con)
                                     throws org.apache.torque.TorqueException
If this collection has already been initialized, returns the collection. Otherwise returns the results of getDBCoordinateSet2ds(new Criteria(),Connection) This method takes in the Connection also as input so that referenced objects can also be obtained using a Connection that is taken as input

Throws:
org.apache.torque.TorqueException

getDBCoordinateSet2ds

public java.util.List getDBCoordinateSet2ds(org.apache.torque.util.Criteria criteria,
                                            java.sql.Connection con)
                                     throws org.apache.torque.TorqueException
If this collection has already been initialized with an identical criteria, it returns the collection. Otherwise if this DBAtom has previously been saved, it will retrieve related DBCoordinateSet2ds from storage. If this DBAtom is new, it will return an empty collection or the current collection, the criteria is ignored on a new object. This method takes in the Connection also as input so that referenced objects can also be obtained using a Connection that is taken as input

Throws:
org.apache.torque.TorqueException

getDBCoordinateSet2dsJoinDBAtom

protected java.util.List getDBCoordinateSet2dsJoinDBAtom(org.apache.torque.util.Criteria criteria)
                                                  throws org.apache.torque.TorqueException
If this collection has already been initialized with an identical criteria, it returns the collection. Otherwise if this DBAtom is new, it will return an empty collection; or if this DBAtom has previously been saved, it will retrieve related DBCoordinateSet2ds from storage. This method is protected by default in order to keep the public api reasonable. You can provide public methods for those you actually need in DBAtom.

Throws:
org.apache.torque.TorqueException

getDBCoordinateSet2dsJoinDBCoordinateSetType

protected java.util.List getDBCoordinateSet2dsJoinDBCoordinateSetType(org.apache.torque.util.Criteria criteria)
                                                               throws org.apache.torque.TorqueException
If this collection has already been initialized with an identical criteria, it returns the collection. Otherwise if this DBAtom is new, it will return an empty collection; or if this DBAtom has previously been saved, it will retrieve related DBCoordinateSet2ds from storage. This method is protected by default in order to keep the public api reasonable. You can provide public methods for those you actually need in DBAtom.

Throws:
org.apache.torque.TorqueException

initDBCoordinateSet3ds

protected void initDBCoordinateSet3ds()
Temporary storage of collDBCoordinateSet3ds to save a possible db hit in the event objects are add to the collection, but the complete collection is never requested.

addDBCoordinateSet3d

public void addDBCoordinateSet3d(DBCoordinateSet3d l)
                          throws org.apache.torque.TorqueException
Method called to associate a DBCoordinateSet3d object to this object through the DBCoordinateSet3d foreign key attribute

Parameters:
l - DBCoordinateSet3d
Throws:
org.apache.torque.TorqueException

getDBCoordinateSet3ds

public java.util.List getDBCoordinateSet3ds()
                                     throws org.apache.torque.TorqueException
If this collection has already been initialized, returns the collection. Otherwise returns the results of getDBCoordinateSet3ds(new Criteria())

Throws:
org.apache.torque.TorqueException

getDBCoordinateSet3ds

public java.util.List getDBCoordinateSet3ds(org.apache.torque.util.Criteria criteria)
                                     throws org.apache.torque.TorqueException
If this collection has already been initialized with an identical criteria, it returns the collection. Otherwise if this DBAtom has previously been saved, it will retrieve related DBCoordinateSet3ds from storage. If this DBAtom is new, it will return an empty collection or the current collection, the criteria is ignored on a new object.

Throws:
org.apache.torque.TorqueException

getDBCoordinateSet3ds

public java.util.List getDBCoordinateSet3ds(java.sql.Connection con)
                                     throws org.apache.torque.TorqueException
If this collection has already been initialized, returns the collection. Otherwise returns the results of getDBCoordinateSet3ds(new Criteria(),Connection) This method takes in the Connection also as input so that referenced objects can also be obtained using a Connection that is taken as input

Throws:
org.apache.torque.TorqueException

getDBCoordinateSet3ds

public java.util.List getDBCoordinateSet3ds(org.apache.torque.util.Criteria criteria,
                                            java.sql.Connection con)
                                     throws org.apache.torque.TorqueException
If this collection has already been initialized with an identical criteria, it returns the collection. Otherwise if this DBAtom has previously been saved, it will retrieve related DBCoordinateSet3ds from storage. If this DBAtom is new, it will return an empty collection or the current collection, the criteria is ignored on a new object. This method takes in the Connection also as input so that referenced objects can also be obtained using a Connection that is taken as input

Throws:
org.apache.torque.TorqueException

getDBCoordinateSet3dsJoinDBAtom

protected java.util.List getDBCoordinateSet3dsJoinDBAtom(org.apache.torque.util.Criteria criteria)
                                                  throws org.apache.torque.TorqueException
If this collection has already been initialized with an identical criteria, it returns the collection. Otherwise if this DBAtom is new, it will return an empty collection; or if this DBAtom has previously been saved, it will retrieve related DBCoordinateSet3ds from storage. This method is protected by default in order to keep the public api reasonable. You can provide public methods for those you actually need in DBAtom.

Throws:
org.apache.torque.TorqueException

getDBCoordinateSet3dsJoinDBCoordinateSetType

protected java.util.List getDBCoordinateSet3dsJoinDBCoordinateSetType(org.apache.torque.util.Criteria criteria)
                                                               throws org.apache.torque.TorqueException
If this collection has already been initialized with an identical criteria, it returns the collection. Otherwise if this DBAtom is new, it will return an empty collection; or if this DBAtom has previously been saved, it will retrieve related DBCoordinateSet3ds from storage. This method is protected by default in order to keep the public api reasonable. You can provide public methods for those you actually need in DBAtom.

Throws:
org.apache.torque.TorqueException

initDBCouplingsRelatedByAtomId1

protected void initDBCouplingsRelatedByAtomId1()
Temporary storage of collDBCouplingsRelatedByAtomId1 to save a possible db hit in the event objects are add to the collection, but the complete collection is never requested.

addDBCouplingRelatedByAtomId1

public void addDBCouplingRelatedByAtomId1(DBCoupling l)
                                   throws org.apache.torque.TorqueException
Method called to associate a DBCoupling object to this object through the DBCoupling foreign key attribute

Parameters:
l - DBCoupling
Throws:
org.apache.torque.TorqueException

getDBCouplingsRelatedByAtomId1

public java.util.List getDBCouplingsRelatedByAtomId1()
                                              throws org.apache.torque.TorqueException
If this collection has already been initialized, returns the collection. Otherwise returns the results of getDBCouplingsRelatedByAtomId1(new Criteria())

Throws:
org.apache.torque.TorqueException

getDBCouplingsRelatedByAtomId1

public java.util.List getDBCouplingsRelatedByAtomId1(org.apache.torque.util.Criteria criteria)
                                              throws org.apache.torque.TorqueException
If this collection has already been initialized with an identical criteria, it returns the collection. Otherwise if this DBAtom has previously been saved, it will retrieve related DBCouplingsRelatedByAtomId1 from storage. If this DBAtom is new, it will return an empty collection or the current collection, the criteria is ignored on a new object.

Throws:
org.apache.torque.TorqueException

getDBCouplingsRelatedByAtomId1

public java.util.List getDBCouplingsRelatedByAtomId1(java.sql.Connection con)
                                              throws org.apache.torque.TorqueException
If this collection has already been initialized, returns the collection. Otherwise returns the results of getDBCouplingsRelatedByAtomId1(new Criteria(),Connection) This method takes in the Connection also as input so that referenced objects can also be obtained using a Connection that is taken as input

Throws:
org.apache.torque.TorqueException

getDBCouplingsRelatedByAtomId1

public java.util.List getDBCouplingsRelatedByAtomId1(org.apache.torque.util.Criteria criteria,
                                                     java.sql.Connection con)
                                              throws org.apache.torque.TorqueException
If this collection has already been initialized with an identical criteria, it returns the collection. Otherwise if this DBAtom has previously been saved, it will retrieve related DBCouplingsRelatedByAtomId1 from storage. If this DBAtom is new, it will return an empty collection or the current collection, the criteria is ignored on a new object. This method takes in the Connection also as input so that referenced objects can also be obtained using a Connection that is taken as input

Throws:
org.apache.torque.TorqueException

getDBCouplingsRelatedByAtomId1JoinDBAtomRelatedByAtomId2

protected java.util.List getDBCouplingsRelatedByAtomId1JoinDBAtomRelatedByAtomId2(org.apache.torque.util.Criteria criteria)
                                                                           throws org.apache.torque.TorqueException
If this collection has already been initialized with an identical criteria, it returns the collection. Otherwise if this DBAtom is new, it will return an empty collection; or if this DBAtom has previously been saved, it will retrieve related DBCouplingsRelatedByAtomId1 from storage. This method is protected by default in order to keep the public api reasonable. You can provide public methods for those you actually need in DBAtom.

Throws:
org.apache.torque.TorqueException

getDBCouplingsRelatedByAtomId1JoinDBSpectrum

protected java.util.List getDBCouplingsRelatedByAtomId1JoinDBSpectrum(org.apache.torque.util.Criteria criteria)
                                                               throws org.apache.torque.TorqueException
If this collection has already been initialized with an identical criteria, it returns the collection. Otherwise if this DBAtom is new, it will return an empty collection; or if this DBAtom has previously been saved, it will retrieve related DBCouplingsRelatedByAtomId1 from storage. This method is protected by default in order to keep the public api reasonable. You can provide public methods for those you actually need in DBAtom.

Throws:
org.apache.torque.TorqueException

initDBCouplingsRelatedByAtomId2

protected void initDBCouplingsRelatedByAtomId2()
Temporary storage of collDBCouplingsRelatedByAtomId2 to save a possible db hit in the event objects are add to the collection, but the complete collection is never requested.

addDBCouplingRelatedByAtomId2

public void addDBCouplingRelatedByAtomId2(DBCoupling l)
                                   throws org.apache.torque.TorqueException
Method called to associate a DBCoupling object to this object through the DBCoupling foreign key attribute

Parameters:
l - DBCoupling
Throws:
org.apache.torque.TorqueException

getDBCouplingsRelatedByAtomId2

public java.util.List getDBCouplingsRelatedByAtomId2()
                                              throws org.apache.torque.TorqueException
If this collection has already been initialized, returns the collection. Otherwise returns the results of getDBCouplingsRelatedByAtomId2(new Criteria())

Throws:
org.apache.torque.TorqueException

getDBCouplingsRelatedByAtomId2

public java.util.List getDBCouplingsRelatedByAtomId2(org.apache.torque.util.Criteria criteria)
                                              throws org.apache.torque.TorqueException
If this collection has already been initialized with an identical criteria, it returns the collection. Otherwise if this DBAtom has previously been saved, it will retrieve related DBCouplingsRelatedByAtomId2 from storage. If this DBAtom is new, it will return an empty collection or the current collection, the criteria is ignored on a new object.

Throws:
org.apache.torque.TorqueException

getDBCouplingsRelatedByAtomId2

public java.util.List getDBCouplingsRelatedByAtomId2(java.sql.Connection con)
                                              throws org.apache.torque.TorqueException
If this collection has already been initialized, returns the collection. Otherwise returns the results of getDBCouplingsRelatedByAtomId2(new Criteria(),Connection) This method takes in the Connection also as input so that referenced objects can also be obtained using a Connection that is taken as input

Throws:
org.apache.torque.TorqueException

getDBCouplingsRelatedByAtomId2

public java.util.List getDBCouplingsRelatedByAtomId2(org.apache.torque.util.Criteria criteria,
                                                     java.sql.Connection con)
                                              throws org.apache.torque.TorqueException
If this collection has already been initialized with an identical criteria, it returns the collection. Otherwise if this DBAtom has previously been saved, it will retrieve related DBCouplingsRelatedByAtomId2 from storage. If this DBAtom is new, it will return an empty collection or the current collection, the criteria is ignored on a new object. This method takes in the Connection also as input so that referenced objects can also be obtained using a Connection that is taken as input

Throws:
org.apache.torque.TorqueException

getDBCouplingsRelatedByAtomId2JoinDBAtomRelatedByAtomId1

protected java.util.List getDBCouplingsRelatedByAtomId2JoinDBAtomRelatedByAtomId1(org.apache.torque.util.Criteria criteria)
                                                                           throws org.apache.torque.TorqueException
If this collection has already been initialized with an identical criteria, it returns the collection. Otherwise if this DBAtom is new, it will return an empty collection; or if this DBAtom has previously been saved, it will retrieve related DBCouplingsRelatedByAtomId2 from storage. This method is protected by default in order to keep the public api reasonable. You can provide public methods for those you actually need in DBAtom.

Throws:
org.apache.torque.TorqueException

getDBCouplingsRelatedByAtomId2JoinDBSpectrum

protected java.util.List getDBCouplingsRelatedByAtomId2JoinDBSpectrum(org.apache.torque.util.Criteria criteria)
                                                               throws org.apache.torque.TorqueException
If this collection has already been initialized with an identical criteria, it returns the collection. Otherwise if this DBAtom is new, it will return an empty collection; or if this DBAtom has previously been saved, it will retrieve related DBCouplingsRelatedByAtomId2 from storage. This method is protected by default in order to keep the public api reasonable. You can provide public methods for those you actually need in DBAtom.

Throws:
org.apache.torque.TorqueException

initDBBondDBAtoms

protected void initDBBondDBAtoms()
Temporary storage of collDBBondDBAtoms to save a possible db hit in the event objects are add to the collection, but the complete collection is never requested.

addDBBondDBAtom

public void addDBBondDBAtom(DBBondDBAtom l)
                     throws org.apache.torque.TorqueException
Method called to associate a DBBondDBAtom object to this object through the DBBondDBAtom foreign key attribute

Parameters:
l - DBBondDBAtom
Throws:
org.apache.torque.TorqueException

getDBBondDBAtoms

public java.util.List getDBBondDBAtoms()
                                throws org.apache.torque.TorqueException
If this collection has already been initialized, returns the collection. Otherwise returns the results of getDBBondDBAtoms(new Criteria())

Throws:
org.apache.torque.TorqueException

getDBBondDBAtoms

public java.util.List getDBBondDBAtoms(org.apache.torque.util.Criteria criteria)
                                throws org.apache.torque.TorqueException
If this collection has already been initialized with an identical criteria, it returns the collection. Otherwise if this DBAtom has previously been saved, it will retrieve related DBBondDBAtoms from storage. If this DBAtom is new, it will return an empty collection or the current collection, the criteria is ignored on a new object.

Throws:
org.apache.torque.TorqueException

getDBBondDBAtoms

public java.util.List getDBBondDBAtoms(java.sql.Connection con)
                                throws org.apache.torque.TorqueException
If this collection has already been initialized, returns the collection. Otherwise returns the results of getDBBondDBAtoms(new Criteria(),Connection) This method takes in the Connection also as input so that referenced objects can also be obtained using a Connection that is taken as input

Throws:
org.apache.torque.TorqueException

getDBBondDBAtoms

public java.util.List getDBBondDBAtoms(org.apache.torque.util.Criteria criteria,
                                       java.sql.Connection con)
                                throws org.apache.torque.TorqueException
If this collection has already been initialized with an identical criteria, it returns the collection. Otherwise if this DBAtom has previously been saved, it will retrieve related DBBondDBAtoms from storage. If this DBAtom is new, it will return an empty collection or the current collection, the criteria is ignored on a new object. This method takes in the Connection also as input so that referenced objects can also be obtained using a Connection that is taken as input

Throws:
org.apache.torque.TorqueException

getDBBondDBAtomsJoinDBBond

protected java.util.List getDBBondDBAtomsJoinDBBond(org.apache.torque.util.Criteria criteria)
                                             throws org.apache.torque.TorqueException
If this collection has already been initialized with an identical criteria, it returns the collection. Otherwise if this DBAtom is new, it will return an empty collection; or if this DBAtom has previously been saved, it will retrieve related DBBondDBAtoms from storage. This method is protected by default in order to keep the public api reasonable. You can provide public methods for those you actually need in DBAtom.

Throws:
org.apache.torque.TorqueException

getDBBondDBAtomsJoinDBAtom

protected java.util.List getDBBondDBAtomsJoinDBAtom(org.apache.torque.util.Criteria criteria)
                                             throws org.apache.torque.TorqueException
If this collection has already been initialized with an identical criteria, it returns the collection. Otherwise if this DBAtom is new, it will return an empty collection; or if this DBAtom has previously been saved, it will retrieve related DBBondDBAtoms from storage. This method is protected by default in order to keep the public api reasonable. You can provide public methods for those you actually need in DBAtom.

Throws:
org.apache.torque.TorqueException

initDBSignalDBAtoms

protected void initDBSignalDBAtoms()
Temporary storage of collDBSignalDBAtoms to save a possible db hit in the event objects are add to the collection, but the complete collection is never requested.

addDBSignalDBAtom

public void addDBSignalDBAtom(DBSignalDBAtom l)
                       throws org.apache.torque.TorqueException
Method called to associate a DBSignalDBAtom object to this object through the DBSignalDBAtom foreign key attribute

Parameters:
l - DBSignalDBAtom
Throws:
org.apache.torque.TorqueException

getDBSignalDBAtoms

public java.util.List getDBSignalDBAtoms()
                                  throws org.apache.torque.TorqueException
If this collection has already been initialized, returns the collection. Otherwise returns the results of getDBSignalDBAtoms(new Criteria())

Throws:
org.apache.torque.TorqueException

getDBSignalDBAtoms

public java.util.List getDBSignalDBAtoms(org.apache.torque.util.Criteria criteria)
                                  throws org.apache.torque.TorqueException
If this collection has already been initialized with an identical criteria, it returns the collection. Otherwise if this DBAtom has previously been saved, it will retrieve related DBSignalDBAtoms from storage. If this DBAtom is new, it will return an empty collection or the current collection, the criteria is ignored on a new object.

Throws:
org.apache.torque.TorqueException

getDBSignalDBAtoms

public java.util.List getDBSignalDBAtoms(java.sql.Connection con)
                                  throws org.apache.torque.TorqueException
If this collection has already been initialized, returns the collection. Otherwise returns the results of getDBSignalDBAtoms(new Criteria(),Connection) This method takes in the Connection also as input so that referenced objects can also be obtained using a Connection that is taken as input

Throws:
org.apache.torque.TorqueException

getDBSignalDBAtoms

public java.util.List getDBSignalDBAtoms(org.apache.torque.util.Criteria criteria,
                                         java.sql.Connection con)
                                  throws org.apache.torque.TorqueException
If this collection has already been initialized with an identical criteria, it returns the collection. Otherwise if this DBAtom has previously been saved, it will retrieve related DBSignalDBAtoms from storage. If this DBAtom is new, it will return an empty collection or the current collection, the criteria is ignored on a new object. This method takes in the Connection also as input so that referenced objects can also be obtained using a Connection that is taken as input

Throws:
org.apache.torque.TorqueException

getDBSignalDBAtomsJoinDBSignal

protected java.util.List getDBSignalDBAtomsJoinDBSignal(org.apache.torque.util.Criteria criteria)
                                                 throws org.apache.torque.TorqueException
If this collection has already been initialized with an identical criteria, it returns the collection. Otherwise if this DBAtom is new, it will return an empty collection; or if this DBAtom has previously been saved, it will retrieve related DBSignalDBAtoms from storage. This method is protected by default in order to keep the public api reasonable. You can provide public methods for those you actually need in DBAtom.

Throws:
org.apache.torque.TorqueException

getDBSignalDBAtomsJoinDBAtom

protected java.util.List getDBSignalDBAtomsJoinDBAtom(org.apache.torque.util.Criteria criteria)
                                               throws org.apache.torque.TorqueException
If this collection has already been initialized with an identical criteria, it returns the collection. Otherwise if this DBAtom is new, it will return an empty collection; or if this DBAtom has previously been saved, it will retrieve related DBSignalDBAtoms from storage. This method is protected by default in order to keep the public api reasonable. You can provide public methods for those you actually need in DBAtom.

Throws:
org.apache.torque.TorqueException

initDBIdentifiers

protected void initDBIdentifiers()
Temporary storage of collDBIdentifiers to save a possible db hit in the event objects are add to the collection, but the complete collection is never requested.

addDBIdentifier

public void addDBIdentifier(DBIdentifier l)
                     throws org.apache.torque.TorqueException
Method called to associate a DBIdentifier object to this object through the DBIdentifier foreign key attribute

Parameters:
l - DBIdentifier
Throws:
org.apache.torque.TorqueException

getDBIdentifiers

public java.util.List getDBIdentifiers()
                                throws org.apache.torque.TorqueException
If this collection has already been initialized, returns the collection. Otherwise returns the results of getDBIdentifiers(new Criteria())

Throws:
org.apache.torque.TorqueException

getDBIdentifiers

public java.util.List getDBIdentifiers(org.apache.torque.util.Criteria criteria)
                                throws org.apache.torque.TorqueException
If this collection has already been initialized with an identical criteria, it returns the collection. Otherwise if this DBAtom has previously been saved, it will retrieve related DBIdentifiers from storage. If this DBAtom is new, it will return an empty collection or the current collection, the criteria is ignored on a new object.

Throws:
org.apache.torque.TorqueException

getDBIdentifiers

public java.util.List getDBIdentifiers(java.sql.Connection con)
                                throws org.apache.torque.TorqueException
If this collection has already been initialized, returns the collection. Otherwise returns the results of getDBIdentifiers(new Criteria(),Connection) This method takes in the Connection also as input so that referenced objects can also be obtained using a Connection that is taken as input

Throws:
org.apache.torque.TorqueException

getDBIdentifiers

public java.util.List getDBIdentifiers(org.apache.torque.util.Criteria criteria,
                                       java.sql.Connection con)
                                throws org.apache.torque.TorqueException
If this collection has already been initialized with an identical criteria, it returns the collection. Otherwise if this DBAtom has previously been saved, it will retrieve related DBIdentifiers from storage. If this DBAtom is new, it will return an empty collection or the current collection, the criteria is ignored on a new object. This method takes in the Connection also as input so that referenced objects can also be obtained using a Connection that is taken as input

Throws:
org.apache.torque.TorqueException

getDBIdentifiersJoinDBAtom

protected java.util.List getDBIdentifiersJoinDBAtom(org.apache.torque.util.Criteria criteria)
                                             throws org.apache.torque.TorqueException
If this collection has already been initialized with an identical criteria, it returns the collection. Otherwise if this DBAtom is new, it will return an empty collection; or if this DBAtom has previously been saved, it will retrieve related DBIdentifiers from storage. This method is protected by default in order to keep the public api reasonable. You can provide public methods for those you actually need in DBAtom.

Throws:
org.apache.torque.TorqueException

getDBIdentifiersJoinDBLiterature

protected java.util.List getDBIdentifiersJoinDBLiterature(org.apache.torque.util.Criteria criteria)
                                                   throws org.apache.torque.TorqueException
If this collection has already been initialized with an identical criteria, it returns the collection. Otherwise if this DBAtom is new, it will return an empty collection; or if this DBAtom has previously been saved, it will retrieve related DBIdentifiers from storage. This method is protected by default in order to keep the public api reasonable. You can provide public methods for those you actually need in DBAtom.

Throws:
org.apache.torque.TorqueException

getFieldNames

public static java.util.List getFieldNames()
Generate a list of field names.

Returns:
a list of field names

getByName

public java.lang.Object getByName(java.lang.String name)
Retrieves a field from the object by name passed in as a String.

Overrides:
getByName in class org.apache.torque.om.BaseObject
Parameters:
name - field name
Returns:
value

getByPeerName

public java.lang.Object getByPeerName(java.lang.String name)
Retrieves a field from the object by name passed in as a String. The String must be one of the static Strings defined in this Class' Peer.

Overrides:
getByPeerName in class org.apache.torque.om.BaseObject
Parameters:
name - peer name
Returns:
value

getByPosition

public java.lang.Object getByPosition(int pos)
Retrieves a field from the object by Position as specified in the xml schema. Zero-based.

Overrides:
getByPosition in class org.apache.torque.om.BaseObject
Parameters:
pos - position in xml schema
Returns:
value

save

public void save()
          throws java.lang.Exception
Stores the object in the database. If the object is new, it inserts it; otherwise an update is performed.

Specified by:
save in interface org.apache.torque.om.Persistent
Specified by:
save in class org.apache.torque.om.BaseObject
Throws:
java.lang.Exception

save

public void save(java.lang.String dbName)
          throws org.apache.torque.TorqueException
Stores the object in the database. If the object is new, it inserts it; otherwise an update is performed. Note: this code is here because the method body is auto-generated conditionally and therefore needs to be in this file instead of in the super class, BaseObject.

Specified by:
save in interface org.apache.torque.om.Persistent
Specified by:
save in class org.apache.torque.om.BaseObject
Parameters:
dbName -
Throws:
org.apache.torque.TorqueException

save

public void save(java.sql.Connection con)
          throws org.apache.torque.TorqueException
Stores the object in the database. If the object is new, it inserts it; otherwise an update is performed. This method is meant to be used as part of a transaction, otherwise use the save() method and the connection details will be handled internally

Specified by:
save in interface org.apache.torque.om.Persistent
Specified by:
save in class org.apache.torque.om.BaseObject
Parameters:
con -
Throws:
org.apache.torque.TorqueException

setPrimaryKey

public void setPrimaryKey(org.apache.torque.om.ObjectKey key)
                   throws org.apache.torque.TorqueException
Set the PrimaryKey using ObjectKey.

Specified by:
setPrimaryKey in interface org.apache.torque.om.Persistent
Overrides:
setPrimaryKey in class org.apache.torque.om.BaseObject
Parameters:
atomId - ObjectKey
Throws:
org.apache.torque.TorqueException

setPrimaryKey

public void setPrimaryKey(java.lang.String key)
                   throws org.apache.torque.TorqueException
Set the PrimaryKey using a String.

Specified by:
setPrimaryKey in interface org.apache.torque.om.Persistent
Overrides:
setPrimaryKey in class org.apache.torque.om.BaseObject
Parameters:
key -
Throws:
org.apache.torque.TorqueException

getPrimaryKey

public org.apache.torque.om.ObjectKey getPrimaryKey()
returns an id that differentiates this object from others of its class.

Specified by:
getPrimaryKey in interface org.apache.torque.om.Persistent
Overrides:
getPrimaryKey in class org.apache.torque.om.BaseObject

copy

public DBAtom copy()
            throws org.apache.torque.TorqueException
Makes a copy of this object. It creates a new object filling in the simple attributes. It then fills all the association collections and sets the related objects to isNew=true.

Throws:
org.apache.torque.TorqueException

copyInto

protected DBAtom copyInto(DBAtom copyObj)
                   throws org.apache.torque.TorqueException
Throws:
org.apache.torque.TorqueException

getPeer

public DBAtomPeer getPeer()
returns a peer instance associated with this om. Since Peer classes are not to have any instance attributes, this method returns the same instance for all member of this class. The method could therefore be static, but this would prevent one from overriding the behavior.

toString

public java.lang.String toString()
Overrides:
toString in class java.lang.Object
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